| 1 |  José Joaquin Rojas Gil (SPA) | Movistar | 3:18:59 |
| 2 | Gorka Izagirre Insausti (SPA) | Euskaltel - Euskadi | s.t. |
| 3 | Juan Jose Cobo Acebo (SPA) | Geox - TMC | s.t. |
| 4 |  Sebastian Langeveld (NED) | Rabobank | s.t. |
| 5 |  Tony Martin (GER) | HTC - High Road | s.t. |
| 6 | Francisco José Ventoso Alberdi (SPA) | Movistar | s.t. |
| 7 |  Ryder Hesjedal (CAN) | Garmin - Cervelo | s.t. |
| 8 |  Danilo Di Luca (ITA) | Team Katusha | s.t. |
| 9 | Daniel Moreno Fernández (SPA) | Team Katusha | s.t. |
| 10 |  Dries Devenyns (BEL) | Quick Step | s.t. |
| 11 | Maxime Monfort (BEL) | Leopard - Trek | s.t. |
| 12 | Johannes Fröhlinger (GER) | Skil - Shimano | s.t. |
| 13 | Ben Hermans (BEL) | Radio Shack | s.t. |
| 14 | Pablo Urtasun Perez (SPA) | Euskaltel - Euskadi | s.t. |
| 15 | Maxime Vantomme (BEL) | Team Katusha | s.t. |
| 16 |  Fabio Andres Duarte Arevalo (COL) | Geox - TMC | s.t. |
| 17 | Arkaitz Duran Aroca (SPA) | Geox - TMC | s.t. |
| 18 | David De La Fuente Rasilla (SPA) | Geox - TMC | s.t. |
| 19 |  Tiago Jose Pinto Machado (POR) | Radio Shack | s.t. |
| 20 | Nicolas Jonathan Castroviejo (SPA) | Euskaltel - Euskadi | s.t. |
| 21 |  Fränk Schleck (LUX) | Leopard - Trek | s.t. |
| 22 | Rafael Valls Ferri (SPA) | Geox - TMC | s.t. |
| 23 |  Marcel Wyss (SWI) | Geox - TMC | s.t. |
| 24 | Tom Jelte Slagter (NED) | Rabobank | s.t. |
| 25 | Inaki Isasi Flores (SPA) | Euskaltel - Euskadi | s.t. |
| 26 | Linus Gerdemann (GER) | Leopard - Trek | s.t. |
| 27 |  Craig Lewis (USA) | HTC - High Road | s.t. |
| 28 |  Peter Velits (SVK) | HTC - High Road | s.t. |
| 29 | Iban Velasco Murillo (SPA) | Euskaltel - Euskadi | s.t. |
| 30 | Vicente David Bernabéu Armengol (SPA) | Andalucia - Caja Granada | s.t. |
| 31 | Haimar Zubeldia Aguirre (SPA) | Radio Shack | s.t. |
| 32 | Tejay Van Garderen (USA) | HTC - High Road | s.t. |
| 33 | José Herrada Lopez (SPA) | Caja Rural | s.t. |
| 34 |  Jakob Fuglsang (DEN) | Leopard - Trek | s.t. |
| 35 | Luis León Sánchez Gil (SPA) | Rabobank | 0:00:09 |
| 36 | Thomas Danielson (USA) | Garmin - Cervelo | s.t. |
| 37 | Dario Cataldo (ITA) | Quick Step | s.t. |
| 38 | Oliver Zaugg (SWI) | Leopard - Trek | s.t. |
| 39 | Javier Ramirez Abeja (SPA) | Andalucia - Caja Granada | s.t. |
| 40 |  Jérôme Pineau (FRA) | Quick Step | s.t. |
| 41 | David Belda Garcia (SPA) | Burgos 2016 - Castilla y Leon | s.t. |
| 42 | Laurens Ten Dam (NED) | Rabobank | s.t. |
| 43 | Ricardo Garcia Ambroa (SPA) | Orbea | s.t. |
| 44 |  Leopold König (CZE) | Team Netapp | s.t. |
| 45 |  Fumiyuki Beppu (JPN) | Radio Shack | s.t. |
| 46 | Francis De Greef (BEL) | Omega Pharma - Lotto | s.t. |
| 47 | Sergio Pardilla Bellón (SPA) | Movistar | s.t. |
| 48 |  Alexandr Kolobnev (RUS) | Team Katusha | s.t. |
| 49 | Antonio Piedra Perez (SPA) | Andalucia - Caja Granada | s.t. |
| 50 | Sergio Mantecon Gutierrez (SPA) | Spain National Team | s.t. |
| 51 | Bauke Mollema (NED) | Rabobank | s.t. |
| 52 | Xavier Tondo Volpini (SPA) | Movistar | 0:00:43 |
| 53 | Joan Horrach Rippoll (SPA) | Team Katusha | 0:01:00 |
| 54 | Bart De Clercq (BEL) | Omega Pharma - Lotto | s.t. |
| 55 | Adrian Palomares Villaplana (SPA) | Andalucia - Caja Granada | 0:01:04 |
| 56 | Mikel Bizkarra Etxeguibel (SPA) | Orbea | s.t. |
| 57 | Tristan Valentin (FRA) | Cofidis | s.t. |
| 58 | Bruno Manuel Silva Pires (POR) | Leopard - Trek | 0:01:29 |
| 59 | Jose Luis Roldan Carmona (SPA) | Andalucia - Caja Granada | 0:02:49 |
| 60 | Juan Manuel Gárate Cepa (SPA) | Rabobank | 0:03:24 |
| 61 | Pablo Lastras Garcia (SPA) | Movistar | s.t. |
| 62 | Nicolas Schnyder (SWI) | Price Your Bike | s.t. |
| 63 | Pieter Weening (NED) | Rabobank | s.t. |
| 64 | Martin Velits (SVK) | HTC - High Road | s.t. |
| 65 | Jon Izagirre Insausti (SPA) | Euskaltel - Euskadi | s.t. |
| 66 | Gert Dockx (BEL) | Omega Pharma - Lotto | s.t. |
| 67 | Vicente Reynès Mimo (SPA) | Omega Pharma - Lotto | s.t. |
| 68 | Arturo Mora Ortiz (SPA) | Caja Rural | s.t. |
| 69 | Pascual Orengo Lopez (SPA) | Burgos 2016 - Castilla y Leon | s.t. |
| 70 |  Vasil Kiryienka (BLR) | Movistar | s.t. |
| 71 | Carlos Verona Quintanilla (SPA) | Burgos 2016 - Castilla y Leon | s.t. |
| 72 | Alberto Losada Alguacil (SPA) | Team Katusha | s.t. |
| 73 | David Arroyo Duran (SPA) | Movistar | s.t. |
| 74 | Vladimir Karpets (RUS) | Team Katusha | s.t. |
| 75 | Giampaolo Cheula (ITA) | Geox - TMC | s.t. |
| 76 | Davide Malacarne (ITA) | Quick Step | s.t. |
| 77 | Timon Seubert (GER) | Team Netapp | s.t. |
| 78 | Maarten Neyens (BEL) | Omega Pharma - Lotto | s.t. |
| 79 | Addy Engels (NED) | Quick Step | s.t. |
| 80 |  Christopher Jennings (RSA) | Burgos 2016 - Castilla y Leon | 0:04:02 |
| 81 | Elias Schmäh (SWI) | Price Your Bike | 0:04:32 |
| 82 | Bernhard Oberholzer (SWI) | Price Your Bike | s.t. |
| 83 | Alexander Gottfried (GER) | Team Netapp | s.t. |
| 84 | Jan Bárta (CZE) | Team Netapp | s.t. |
| 85 | Antonio Cabello Baena (SPA) | Andalucia - Caja Granada | s.t. |
| 86 | Philippe Gilbert (BEL) | Omega Pharma - Lotto | s.t. |
| 87 |  Michael Matthews (AUS) | Rabobank | s.t. |
| 88 | Igor Antón Hernandez (SPA) | Euskaltel - Euskadi | s.t. |
| 89 |  Marc De Maar (ANT) | Quick Step | s.t. |
| 90 | Joaquim Rodríguez Oliver (SPA) | Team Katusha | s.t. |
| 91 | Petr Ignatenko (RUS) | Team Katusha | s.t. |
| 92 | Imanol Erviti Ollo (SPA) | Movistar | s.t. |
| 93 | Sebastian Lang (GER) | Omega Pharma - Lotto | s.t. |
| 94 | Grischa Niermann (GER) | Rabobank | s.t. |
| 95 | Xabier Zabalo Imaz (SPA) | Orbea | s.t. |
| 96 | Mikel Nieve Iturralde (SPA) | Euskaltel - Euskadi | s.t. |
| 97 | Higinio Fernandez Suarez (SPA) | Caja Rural | s.t. |
| 98 | José Alberto Benitez Roman (SPA) | Andalucia - Caja Granada | s.t. |
| 99 | José Vicente Toribio Alcolea (SPA) | Andalucia - Caja Granada | s.t. |
| 100 | Julien Vermote (BEL) | Quick Step | s.t. |
| 101 | Frantisek Rabon (CZE) | HTC - High Road | s.t. |
| 102 | Caleb Fairly (USA) | HTC - High Road | s.t. |
| 103 | Danny Pate (USA) | HTC - High Road | s.t. |
| 104 | Pello Bilbao López de Armentia (SPA) | Euskaltel - Euskadi | s.t. |
| 105 | Mikel Landa Meana (SPA) | Euskaltel - Euskadi | s.t. |
| 106 | Aritz Etxebarria Etxebarria (SPA) | Orbea | s.t. |
| 107 | David Blanco Rodriguez (SPA) | Geox - TMC | s.t. |
| 108 | Denis Menchov (RUS) | Geox - TMC | s.t. |
| 109 | Mitchell Docker (AUS) | Skil - Shimano | s.t. |
| 110 | Martijn Maaskant (NED) | Garmin - Cervelo | s.t. |
| 111 | Kevin Seeldraeyers (BEL) | Quick Step | s.t. |
| 112 | Thomas Bonnin (FRA) | Skil - Shimano | s.t. |
| 113 |  Bartosz Huzarski (POL) | Team Netapp | 0:05:28 |
| 114 | Dimitri Claeys (BEL) | Team Netapp | s.t. |
| 115 | Steven Kruijswijk (NED) | Rabobank | 0:06:51 |
| 116 | Pablo Lechuga Rodriguez (SPA) | Andalucia - Caja Granada | 0:07:35 |
| 117 | Brice Feillu (FRA) | Leopard - Trek | s.t. |
| 118 | Diego Milán Jiménez (SPA) | Caja Rural | s.t. |
| 119 | Víctor De La Parte Gonzalez (SPA) | Caja Rural | s.t. |
| 120 | Jacques Janse Van Rensburg (RSA) | Burgos 2016 - Castilla y Leon | 0:07:42 |
| 121 | Bert Grabsch (GER) | HTC - High Road | s.t. |
| 122 | Miguel Minguez Ayala (SPA) | Euskaltel - Euskadi | s.t. |
| 123 | Diego Gallego Arnaiz (SPA) | Burgos 2016 - Castilla y Leon | s.t. |
| 124 | Oscar Pujol Muñoz (SPA) | Omega Pharma - Lotto | s.t. |
| 125 | Frederik Willems (BEL) | Omega Pharma - Lotto | s.t. |
| 126 | Víctor Cabedo Carda (SPA) | Orbea | s.t. |
| 127 | Nico Sijmens (BEL) | Cofidis | s.t. |
| 128 | Jelle Vanendert (BEL) | Omega Pharma - Lotto | 0:08:01 |
| 129 | Jesus Del Nero Montes (SPA) | Team Netapp | 0:09:36 |
| 130 | Geoffroy Lequatre (FRA) | Radio Shack | 0:10:52 |
| 131 | Nelson Filipe Santos Simoes Oliveira (POR) | Radio Shack | s.t. |
| 132 |  Jesse Sergent (NZL) | Radio Shack | s.t. |
| 133 | Manuel Ortega Ocana (SPA) | Andalucia - Caja Granada | 0:12:13 |
| 134 | Sebastián Mora Vedri (SPA) | Spain National Team | 0:13:13 |
| 135 | Robert Retschke (GER) | Team Netapp | s.t. |
| 136 | Benjamin King (USA) | Radio Shack | s.t. |
| 137 | Andy Schleck (LUX) | Leopard - Trek | s.t. |
| 138 | Sébastien Rosseler (BEL) | Radio Shack | s.t. |
| 139 | Andy Cappelle (BEL) | Quick Step | s.t. |
| 140 | Kevyn Ista (BEL) | Cofidis | s.t. |
| 141 | Jens Voigt (GER) | Leopard - Trek | s.t. |
| 142 | Marzio Bruseghin (ITA) | Movistar | s.t. |
| 143 | David Gutierrez Gutierrez (SPA) | Geox - TMC | s.t. |
| 144 | Jakob Steigmiller (GER) | Thüringer Energie Team | s.t. |
| 145 | Sergio Miguel Paulinho Moreira (POR) | Radio Shack | s.t. |
| 146 | Airán Fernández Casasola (SPA) | Spain National Team | s.t. |
| 147 | Antonio Miguel Parra (SPA) | Spain National Team | s.t. |
| 148 | Daniel Sesma Sorbet (SPA) | Euskaltel - Euskadi | s.t. |
| 149 |  Ramunas Navardauskas (LTU) | Garmin - Cervelo | s.t. |
| 150 | José Vicente Garcia Acosta (SPA) | Movistar | 0:14:16 |
| 151 | Marcel Aregger (SWI) | Price Your Bike | s.t. |
| 152 | Jens Keukeleire (BEL) | Cofidis | s.t. |
| 153 | Jon Aberasturi Izaga (SPA) | Orbea | s.t. |
| 154 | Daniel Henggeler (SWI) | Price Your Bike | s.t. |
| 155 | Tony Gallopin (FRA) | Cofidis | s.t. |
| 156 | Henning Bommel (GER) | LKT Team Brandenburg | s.t. |
| 157 | Aritz Bagües Kalparsoro (SPA) | Orbea | s.t. |
| 158 | Raul Alarcon Garcia (SPA) | Barbot - Efapel | 0:18:25 |
| 159 | Julian Sanchez Pimienta (SPA) | Caja Rural | s.t. |
| 160 | Robin Chaigneau (NED) | Skil - Shimano | s.t. |
| 161 | Noel Martín Infante (SPA) | Orbea | s.t. |
